--- calcmem.sh.orig 2026-08-31 16:31:16 UTC +++ calcmem.sh @@ -144,26 +144,6 @@ setEnvironment(){ if [[ "$SHIFTER_RUNTIME" = "1" ]]; then #Ignore NERSC_HOST shifter=1 - elif [ -z "$EC2_HOME" ]; then - #Let's assume this is the AWS taxonomy server... - PATH=/test1/binaries/bgzip:$PATH - PATH=/test1/binaries/lbzip2/bin:$PATH - PATH=/test1/binaries/sambamba:$PATH - #PATH=/test1/binaries/java/jdk-11.0.2/bin:$PATH - PATH=/test1/binaries/pigz2/pigz-2.4:$PATH - elif [ -z "$NERSC_HOST" ]; then - #Not NERSC; do nothing - : - elif [ -z "$NERSC_HOST" ]; then - #Not NERSC; do nothing - : - else - PATH=/global/cfs/cdirs/bbtools/bgzip:$PATH - PATH=/global/cfs/cdirs/bbtools/lbzip2/bin:$PATH - PATH=/global/cfs/cdirs/bbtools/samtools116/samtools-1.16.1:$PATH - #PATH=/global/projectb/sandbox/gaag/bbtools/sambamba:$PATH - PATH=/global/cfs/cdirs/bbtools/java/jdk-17/bin:$PATH - PATH=/global/cfs/cdirs/bbtools/pigz2/pigz-2.4:$PATH fi }